Insertion junction: CLIP2.001129_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.001129
Chromosome:chromosome 3
Location:1858352
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g154500 (1 of 1) PF03164 - Trafficking protein Mon1 (Mon1) 3'UTR
Cre03.g154550 PCR1,P5CR1 Pyrroline-5-carboxylate reductase; (1 of 1) 1.5.1.2 - Pyrroline-5-carboxylate reductase / P5CR 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AACGGAACGGCGGCGTCCGGACCGCCCCTTGCGCAACAGACATGGGGCAT
Internal bar code:GGTGTTAGGTAAAAGGAAACAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1176
LEAP-Seq percent confirming:88.5714
LEAP-Seq n confirming:31
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:35

Suggested primers for confirmation by PCR

Suggested primer 1:CCCTCAAGGACATGGTCACC
Suggested primer 2:CGAACATATACCGCTGGCCT