Insertion junction: CLIP2.001145_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.001145
Chromosome:chromosome 3
Location:5481033
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g184500 (1 of 2) PTHR33925:SF3 - PROTEIN ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, CHLOROPLASTIC CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AACCATCACCATCGGAGGTGAGCTGCTTGCCTCGCCCGACGGCCTGTCGC
Internal bar code:GATGCTACGCGGTTCGTAATTT

Confirmation - LEAP-Seq

LEAP-Seq distance:2118
LEAP-Seq percent confirming:98.1481
LEAP-Seq n confirming:53
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:54

Suggested primers for confirmation by PCR

Suggested primer 1:CAACAGCTCGACCACCTCTT
Suggested primer 2:AGACTATACGCTCAGCACGC