Insertion junction: CLIP2.001145_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.001145
Chromosome:chromosome 3
Location:5481034
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g184500 (1 of 2) PTHR33925:SF3 - PROTEIN ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, CHLOROPLASTIC CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCTCACACTGACCAACCTGCACAACCATCGTTACAAGGCGTGAGTACATA
Internal bar code:GGTACGGTGCGGCGTTTCCTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:2676
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:140
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:140

Suggested primers for confirmation by PCR

Suggested primer 1:AGACTATACGCTCAGCACGC
Suggested primer 2:CAACAGCTCGACCACCTCTT