Insertion junction: CLIP2.001178_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.001178
Chromosome:chromosome 9
Location:5334128
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g407600 TEN1 Conserved TenA familiy member; (1 of 1) PTHR20858//PTHR20858:SF18 - PHOSPHOMETHYLPYRIMIDINE KINASE // PROTEIN PET18 3'UTR
Cre09.g407650 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCGATGCAAGGCTGCCTGCCAAGGCGCCATAGGCGTTCTGGTCAGTTCT
Internal bar code:ACCATAGTGTCTAGGGCCCTCT

Confirmation - LEAP-Seq

LEAP-Seq distance:303
LEAP-Seq percent confirming:4.34783
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:22
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:AAATGTGGCGTGACGTGTTG
Suggested primer 2:GTTGTCAAGAACACGGGCAC