Insertion junction: CLIP2.001201_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.001201
Chromosome:chromosome 1
Location:4697450
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g032550 CGL127 (1 of 1) K11267 - sister chromatid cohesion protein PDS5 (PDS5); Conserved in the Green Lineage CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTTGCGATTGGCGCCATCCACAGGCGGCTGGCGCGCCGCAGCCCCGCCC
Internal bar code:CTTCGACGCTCATGTAGGGAAC

Confirmation - LEAP-Seq

LEAP-Seq distance:1484
LEAP-Seq percent confirming:36.0
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:16
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:ATCCTACTCAGCCCCACCAT
Suggested primer 2:GCCAGACAATGTGCATAGCG