Insertion junction: CLIP2.001219_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.001219
Chromosome:chromosome 7
Location:5412493
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g350500 TSV,TSV1 Valyl-tRNA synthetase; (1 of 1) PTHR11946//PTHR11946:SF76 - ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES // ATP BINDING/VALINE-TRNA LIGASE/AMINOACYL-TRNA LIGASE intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTAATGAGGGAGGGAGGGATGGAAGGAGGGACGGCAGCTGGTTGACACGC
Internal bar code:GGGCGCCGGCGGCCTATGTGAA

Confirmation - LEAP-Seq

LEAP-Seq distance:2544
LEAP-Seq percent confirming:95.9184
LEAP-Seq n confirming:94
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:98

Suggested primers for confirmation by PCR

Suggested primer 1:CACAGGGTTGCAACAGGTTG
Suggested primer 2:AGCAAGAGCACGAGAGCTTT