Insertion junction: CLIP2.001274_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.001274
Chromosome:chromosome 16
Location:5964045
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g678750 5'UTR
Cre16.g678851 SBP2,PSBP2 PsbP-like protein of thylakoid lumen; (1 of 1) PTHR31407//PTHR31407:SF3 - FAMILY NOT NAMED // PSBP DOMAIN-CONTAINING PROTEIN 2, CHLOROPLASTIC 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGTAGCGAATGCTTGCTTGTTCGTGGCCTGACAGCCCCATGCCACGTAC
Internal bar code:ATCTATAAACTGAATAGGGTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:701
LEAP-Seq percent confirming:89.4737
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:19

Suggested primers for confirmation by PCR

Suggested primer 1:TGGCTGAGAAAGGGAAGCTG
Suggested primer 2:CTGAGCCATGGACACCACAT