Insertion junction: CLIP2.001275_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.001275
Chromosome:chromosome 15
Location:2065492
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g142146 HCF244,CGL102 (1 of 1) PTHR14194//PTHR14194:SF81 - NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED // SUBFAMILY NOT NAMED; PSII biogenesis protein CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GACCCCGGCAGCGTGACGGACCTGGAGACCTACCTGCAGGTGCGCTGAGG
Internal bar code:GATTTACGAGGGTTAGGGTGTC

Confirmation - LEAP-Seq

LEAP-Seq distance:1756
LEAP-Seq percent confirming:68.5714
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:11
LEAP-Seq n unique pos:35

Suggested primers for confirmation by PCR

Suggested primer 1:AACGAAAAGAAACACCGGCG
Suggested primer 2:CTCAGCATGCCGCAATACAC