Insertion junction: CLIP2.001285_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.001285
Chromosome:chromosome 11
Location:2486358
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g095111 VSR1 Vacuolar Sorting Receptor; (1 of 1) PTHR22765//PTHR22765:SF56 - RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING // VACUOLAR-SORTING RECEPTOR 5-RELATED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GAGTGGCGTGCTCGTGTGTGCATTGTACATGTGTGCGTGGCGGGGTTACG
Internal bar code:TAATGTCTCATTGCATCTTGCT

Confirmation - LEAP-Seq

LEAP-Seq distance:214
LEAP-Seq percent confirming:10.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:AAGCGGTACAGGACGAAAGG
Suggested primer 2:CCACGACCACAGGACATGAA