Insertion junction: CLIP2.001299_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.001299
Chromosome:chromosome 2
Location:3365884
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g098200 CGL103,PRT1 (1 of 1) PF00569//PF13920 - Zinc finger, ZZ type (ZZ) // Zinc finger, C3HC4 type (RING finger) (zf-C3HC4_3); Conserved in the Green Lineage outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGGGGTGCAGGGCCTGCGGCCAAGGCGTGGCTAGTGGCAGCCAGGCTTT
Internal bar code:GTTCCGGGGAATGTGGCGATAA

Confirmation - LEAP-Seq

LEAP-Seq distance:1037
LEAP-Seq percent confirming:8.10811
LEAP-Seq n confirming:3
LEAP-Seq n nonconfirming:34
LEAP-Seq n unique pos:37

Suggested primers for confirmation by PCR

Suggested primer 1:GATGCTGTGCTACATGCTGC
Suggested primer 2:AATTTAGCCCCCTCCCTTGC