Insertion junction: CLIP2.001391_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.001391
Chromosome:chromosome 5
Location:1580145
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g234750 CGLD25 Conserved in the Green Lineage and Diatoms CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTGGGTTGAGCCCGTCTTCGACCCCAGCTCAGCAGCAGGGCGACAACGG
Internal bar code:AGACTTAGTTCGGGTACGCTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:1556
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:GGGTCGTTCACGGTTTTGTG
Suggested primer 2:CTGTGCGTGTTCCTTTTGGG