Insertion junction: CLIP2.001395_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.001395
Chromosome:chromosome 6
Location:2322573
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g267600 LCYE,LEC1,LCYE1 (1 of 1) 5.5.1.18 - Lycopene epsilon-cyclase; lycopene epsilon cyclase, chloroplast precursor intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAATGCGTGCAATCGCTAGTGTGGCCCGCGTCCATCCACTCCACACGCAA
Internal bar code:CTTTCATATAGGCACGGTTGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1039
LEAP-Seq percent confirming:84.6154
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:AACTGCACACCAGACCACAA
Suggested primer 2:TGCTTCACCAGATTAGCGCA