Insertion junction: CLIP2.001486_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.001486
Chromosome:chromosome 3
Location:1319337
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g150350 CPLD70 Conserved in the Plant Lineage and Diatoms; (1 of 5) K14326 - regulator of nonsense transcripts 1 (UPF1, RENT1) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACGCTCCTGGGCGGGCTTTCGTTCCGTTTTGTAACACACGCATGTGTGGC
Internal bar code:GCGTTGGACAATGGCGTGGCCC

Confirmation - LEAP-Seq

LEAP-Seq distance:3085
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:GAGCTCTCCAGTGCAGCTAG
Suggested primer 2:CGTAGTCGGCTAGCCTCAAG