Insertion junction: CLIP2.001509_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.001509
Chromosome:chromosome 3
Location:5478309
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g184500 (1 of 2) PTHR33925:SF3 - PROTEIN ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, CHLOROPLASTIC CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCCACGGTGCACACATGCGCTTCAAGCTGCAGCGGCTGCAGGTGCGTGCC
Internal bar code:ATCAACGCGATAATGACGAGAG

Confirmation - LEAP-Seq

LEAP-Seq distance:3785
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:92
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:92

Suggested primers for confirmation by PCR

Suggested primer 1:CGTACACTCGGACATAGCCC
Suggested primer 2:GGAGAGTGTCCAGGTGTGTG