Insertion junction: CLIP2.001535_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.001535
Chromosome:chromosome 12
Location:2946576
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g502250 PLP4,PLAP4 Plastid lipid associated protein 4; (1 of 17) PF04755 - PAP_fibrillin (PAP_fibrillin) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGCCGCATCCCGCCTGCTTTCCCCTCCCTCCCTCTCCCCGCCCCTCTCC
Internal bar code:TTAGGTCTGTGGGGATCGTTAA

Confirmation - LEAP-Seq

LEAP-Seq distance:59
LEAP-Seq percent confirming:58.3333
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:GTGTGTGTGTGTTGAGGTGC
Suggested primer 2:TGGGGAAGTATGGGGAGGAG