Insertion junction: CLIP2.001578_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.001578
Chromosome:chromosome 1
Location:4158222
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre01.g027764 (1 of 11) K03327 - multidrug resistance protein, MATE family (TC.MATE, SLC47A, norM, mdtK, dinF) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACACCCCATCACCAACCACTCACCAACCACCCGCCACTCCCTACCATTT
Internal bar code:GGGCCGGGTGCAGCGCGCTCGC

Confirmation - LEAP-Seq

LEAP-Seq distance:228
LEAP-Seq percent confirming:68.75
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:CTGAACCTGGTGGGCTACTG
Suggested primer 2:CCAGGACCCAGAATGCCATT