Insertion junction: CLIP2.001583_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.001583
Chromosome:chromosome 12
Location:6597740
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g538700 CPLD62 Conserved in the Plant Lineage and Diatoms; (1 of 2) PF07766 - LETM1-like protein (LETM1) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCCCGATGCGCATTTCATTTTCCTAGTGATTTCACAGCACCAAACGCCA
Internal bar code:TTCATTAGGAGCGGGGGGCAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:2294
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:35
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:35

Suggested primers for confirmation by PCR

Suggested primer 1:CACGCGGTTCTTCCTTACCT
Suggested primer 2:GCGGTCGGTTATAAGGAGGG