Insertion junction: CLIP2.001606_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.001606
Chromosome:chromosome 3
Location:5478417
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g184500 (1 of 2) PTHR33925:SF3 - PROTEIN ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, CHLOROPLASTIC CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGCCAAGGCTTGGGCTCTGGGCCAGTACCATACTACTGACCAGCTGCCC
Internal bar code:GGTGTCTTGGCTTGTTCGAGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:767
LEAP-Seq percent confirming:25.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:4

Suggested primers for confirmation by PCR

Suggested primer 1:CGTACACTCGGACATAGCCC
Suggested primer 2:CAGGGGTTCTCGTAGATCGC