Insertion junction: CLIP2.001606_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.001606
Chromosome:chromosome 3
Location:5487477
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g184500 (1 of 2) PTHR33925:SF3 - PROTEIN ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, CHLOROPLASTIC CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGAGGAGGCGGCGCGCGAGCTGGGCATCGGCATGACTAAGCTGAAGGAG
Internal bar code:ATCATTACGGCGATATCCGTGG

Confirmation - LEAP-Seq

LEAP-Seq distance:3396
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:54
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:54

Suggested primers for confirmation by PCR

Suggested primer 1:CAGGGGTTCTCGTAGATCGC
Suggested primer 2:CGTACACTCGGACATAGCCC