Insertion junction: CLIP2.001646_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.001646
Chromosome:chromosome 6
Location:5126046
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g283000 CGLD39 Conserved in the Green Lineage and Diatoms CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGACCTCGCAGCGTGTCCACCTGTCGGGGGCAGGGCAGGGCAGATTGGG
Internal bar code:AGCATCCAGGTTTCGCGGGGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:65
LEAP-Seq percent confirming:3.50877
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:55
LEAP-Seq n unique pos:57

Suggested primers for confirmation by PCR

Suggested primer 1:CCCCCTCGCTCTATTGCATT
Suggested primer 2:CACCCTTCCAAACACCCAGT