Insertion junction: CLIP2.001653_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.001653
Chromosome:chromosome 13
Location:2604889
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g580850 PRPL22 Chloroplast ribosomal protein L22/L18; (1 of 1) PTHR13501//PTHR13501:SF3 - CHLOROPLAST 50S RIBOSOMAL PROTEIN L22-RELATED // SUBFAMILY NOT NAMED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGCGTGTCCCCGCAAAACTCCCTGACTCCCACACGTCCGACCCGCACTC
Internal bar code:TTAAAGGTAGCCTATGCTTACC

Confirmation - LEAP-Seq

LEAP-Seq distance:3164
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:91
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:91

Suggested primers for confirmation by PCR

Suggested primer 1:CAGACCCGGCCCGTTTTATA
Suggested primer 2:AGATTTGCGACATGGGCTGA