Insertion junction: CLIP2.001681_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.001681
Chromosome:chromosome 7
Location:3843586
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g338800 CGL125 (1 of 4) PF04676 - Protein similar to CwfJ C-terminus 2 (CwfJ_C_2); Conserved in the Green Lineage intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGTGGGCGCAATGGCAGTGGCGGGGCAGTGCACCGGGTGACACTAGCAT
Internal bar code:GGCCACGCCGTGTCGTCTTGGT

Confirmation - LEAP-Seq

LEAP-Seq distance:267
LEAP-Seq percent confirming:14.2857
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:6
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:CGTCTTGAGCTGCTTCAGGA
Suggested primer 2:GTGTTTGCCTGCTGTAACGG