Insertion junction: CLIP2.001717_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.001717
Chromosome:chromosome 3
Location:2098737
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g156450 5'UTR
Cre03.g156500 (1 of 1) IPR000104//IPR016084 - Antifreeze protein, type I // Haem oxygenase-like, multi-helical 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTTGCTCAAGTAAGTAAATACGCACGCACTTCCCATACGATGCAACATCT
Internal bar code:CTTCTATGCGATCTCCAGCTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:2225
LEAP-Seq percent confirming:96.5517
LEAP-Seq n confirming:28
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:CCTCGAACTCGACGATCAGG
Suggested primer 2:GGCATTGTTTCCCAAACCCC