Insertion junction: CLIP2.001808_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.001808
Chromosome:chromosome 6
Location:2823330
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g271950 CGL135,GC6 (1 of 1) PTHR10013 - GENERAL VESICULAR TRANSPORT FACTOR P115; Conserved in the green lineage 135 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATGCTGCTCCCTTACCTCCCCCCGGCAACGACGCGCCTTCTGTACCAATG
Internal bar code:AGGTTATTGCTCCTTTCAACAG

Confirmation - LEAP-Seq

LEAP-Seq distance:791
LEAP-Seq percent confirming:85.7143
LEAP-Seq n confirming:18
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:21

Suggested primers for confirmation by PCR

Suggested primer 1:GTTCGCATTCACCGGTATGC
Suggested primer 2:CCGTACACAACCCATCACCA