Insertion junction: CLIP2.001822_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.001822
Chromosome:chromosome 3
Location:1319753
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g150350 CPLD70 Conserved in the Plant Lineage and Diatoms; (1 of 5) K14326 - regulator of nonsense transcripts 1 (UPF1, RENT1) CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCCAGTGCAGCTAGGGCCGCTGCCCGGGCCTTGGCGGCAATGGCGGCGG
Internal bar code:CCTGGATTCATAACACTTCATT

Confirmation - LEAP-Seq

LEAP-Seq distance:1429
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:50
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:50

Suggested primers for confirmation by PCR

Suggested primer 1:GCACTCGGTACACACAGACA
Suggested primer 2:CGGTTTGCGCCAGTATTGAG