Insertion junction: CLIP2.001905_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.001905
Chromosome:chromosome 5
Location:2409135
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g238500 (1 of 4) K06941 - 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] (rlmN) intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTAATCAATAGAGTATGATCAGCTCACTGCAACGGGGATAGCAACAACT
Internal bar code:CAAACGTAATACGCTTCTCCTT

Confirmation - LEAP-Seq

LEAP-Seq distance:2294
LEAP-Seq percent confirming:91.4286
LEAP-Seq n confirming:32
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:35

Suggested primers for confirmation by PCR

Suggested primer 1:CCGCAACAAGTTTGGACAGG
Suggested primer 2:CAAACGCCCTTCCCTTGTTG