Insertion junction: CLIP2.001906_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.001906
Chromosome:chromosome 3
Location:1041439
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g148250 CGL58 (1 of 1) PTHR15856//PTHR15856:SF25 - PHD FINGER PROTEIN 20-RELATED // SUBFAMILY NOT NAMED; Conserved in the Green Lineage CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCAGTTGAAGCGGCACGAGCTGCCCATACTGCCTCAGGAAGTCGAGAAT
Internal bar code:TAAGACTGAGACTGTCGTCAGA

Confirmation - LEAP-Seq

LEAP-Seq distance:2030
LEAP-Seq percent confirming:78.3784
LEAP-Seq n confirming:29
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:37

Suggested primers for confirmation by PCR

Suggested primer 1:CGTGGACAAGGACCGTGTAA
Suggested primer 2:CTTTTGCACTCAGCCCAACC