Insertion junction: CLIP2.001938_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.001938
Chromosome:chromosome 4
Location:3932987
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre04.g231026 SRP43,cpSRP43 (1 of 1) K12271 - signal recognition particle 43 kDa protein (SRP43, CAO); 43 kDa subunit of chloroplast signal recognition particle intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGTGGGGGATTAGGTGGAGGGCGGTACTAGGTGGAGGCGGCCGAGTAGG
Internal bar code:AAGTGACAAGACCTTCTTCTCA

Confirmation - LEAP-Seq

LEAP-Seq distance:314
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:2

Suggested primers for confirmation by PCR

Suggested primer 1:CGTTTCTCTCGTGTTCCCCA
Suggested primer 2:TACCTACCTACCTGCCCACC