Insertion junction: CLIP2.001958_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.001958
Chromosome:chromosome 10
Location:870428
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g423650 PRPL11 Chloroplast ribosomal protein L11; (1 of 1) PTHR11661//PTHR11661:SF7 - 60S RIBOSOMAL PROTEIN L12 // 50S RIBOSOMAL PROTEIN L11, CHLOROPLASTIC-RELATED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCACGACCACCACGGTACTCCCGTGTCGGATCCATCGGCAAACTGTTTGC
Internal bar code:TGTCATGCTCTGTTGAAGTCTG

Confirmation - LEAP-Seq

LEAP-Seq distance:4247
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:31
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:31

Suggested primers for confirmation by PCR

Suggested primer 1:GTCCAGACCGTTGAGTTCGT
Suggested primer 2:GTAACTGGGTGCGAGGAACA