Insertion junction: CLIP2.001961_3

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.001961
Chromosome:chromosome 12
Location:6322756
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre12.g536900 (1 of 1) IPR000104//IPR003072//IPR003495//IPR011629//IPR012336//IPR027417 - Antifreeze protein, type I // Orphan nuclear receptor, NOR1 type // CobW/HypB/UreG domain // Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal // Thioredoxin-like fold // P-loop containing nucleoside triphosphate hydrolase; Putative metallochaperone intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACTGGGGGCTTGGGCGGCACGGGATTTGTGGTTGGGTAGCCACCCATGGG
Internal bar code:TCACTCAACCATGCCCGAACGC

Confirmation - LEAP-Seq

LEAP-Seq distance:434
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:2

Suggested primers for confirmation by PCR

Suggested primer 1:ACGCGTTGTTACCAGGTGAT
Suggested primer 2:ATCACGATCACGATGAGGGC