Insertion junction: CLIP2.002010_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.002010
Chromosome:chromosome 1
Location:120488
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g000900 CPLD20 Conserved in the Plant Lineage and Diatoms; (1 of 2) PF07082 - Protein of unknown function (DUF1350) (DUF1350) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTTTTGCTAGAGACGCCCACCACCCAACTCTTCGCTGCTTCGGAAAAGT
Internal bar code:TTGTCCGTTAATCCACGGACAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1824
LEAP-Seq percent confirming:88.4615
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:GTATAGGCCCGGAGACTTGC
Suggested primer 2:ACGCCGATAAGGATGACGTC