Insertion junction: CLIP2.002022_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.002022
Chromosome:chromosome 5
Location:151068
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g242400 PGR5 Proton-gradient related; (1 of 1) PTHR35709:SF1 - PROTEIN PROTON GRADIENT REGULATION 5, CHLOROPLASTIC intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACTGAGCGCATCTGAAGCGCTGTTTGGGCAGTCACCGGTCGCCTGCCAA
Internal bar code:TTCGGGACGGGGGATGATGATT

Confirmation - LEAP-Seq

LEAP-Seq distance:3464
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:41
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:41

Suggested primers for confirmation by PCR

Suggested primer 1:TATGTGTTGGTTGCAAGCGC
Suggested primer 2:ACACTCTCACACAGGCCATG