Insertion junction: CLIP2.002032_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.002032
Chromosome:chromosome 1
Location:318132
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g001750 TIG1 chloroplast trigger factor; (1 of 1) PTHR30560 - TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AAAATAAAAACACTGCCTCTCATCCGCTGCATTCCCCTAACAAACCTCCT
Internal bar code:CGAGATACGTCGAAAGAAGACA

Confirmation - LEAP-Seq

LEAP-Seq distance:2247
LEAP-Seq percent confirming:85.7143
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:CTAAGGTGGGAACAGGGCTG
Suggested primer 2:ATGCCTCCATGCTTTCAGCT