Insertion junction: CLIP2.002035_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.002035
Chromosome:chromosome 9
Location:2550859
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g392700 CGL39 Conserved in the Green Lineage CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTTCCGCCATGCCCTTCTCGCTCGGCGCGGGGCAGTGCGCCCGGCCTCAG
Internal bar code:TTCTTCAAGGGCGATAGATATC

Confirmation - LEAP-Seq

LEAP-Seq distance:1241
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:35
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:35

Suggested primers for confirmation by PCR

Suggested primer 1:CGGATTGAATGGAGCGCTTG
Suggested primer 2:GATGGTGGATGGGGCGATAG