Insertion junction: CLIP2.002084_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.002084
Chromosome:chromosome 10
Location:5778318
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g460050 FLU1,FLU,FLP (1 of 1) PTHR10098//PTHR10098:SF123 - RAPSYN-RELATED // SUBFAMILY NOT NAMED; FLU protein, chloroplast precursor outside_mRNA
Cre10.g460100 (1 of 24) IPR001680//IPR017986//IPR020472 - WD40 repeat // WD40-repeat-containing domain // G-protein beta WD-40 repeat 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGACGCGGAATTGCCGTGGTGGATGTGCCTATTTCGCAATCATAAGTTAA
Internal bar code:TTAGTGTTTGAGATTTAAAATG

Confirmation - LEAP-Seq

LEAP-Seq distance:1807
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:ATGGCAGTGCATGGACGTTA
Suggested primer 2:AAAGAGATCCAGCTGTGGGC