Insertion junction: CLIP2.002197_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.002197
Chromosome:chromosome 6
Location:4752661
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g279500 CPL6 Conserved in the Plant Lineage; (1 of 1) PTHR15852:SF8 - CHAPERONE PROTEIN DNAJ-LIKE PROTEIN 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAAACCGGTGACATGCGGCTTTGATATATGCTGTGGTGTTACTACCGTCT
Internal bar code:GTGAGTCCTTCTTATGGGTGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:5441
LEAP-Seq percent confirming:98.9583
LEAP-Seq n confirming:95
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:96

Suggested primers for confirmation by PCR

Suggested primer 1:AATAAAGACGGCGCACCTGA
Suggested primer 2:TCGTGAGTCGAGGAGTCAGT