Insertion junction: CLIP2.002223_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.002223
Chromosome:chromosome 9
Location:2550044
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g392700 CGL39 Conserved in the Green Lineage CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGACGCCAGCTCCGCCTCCAGCGCCCGGAAGGACGCGGGCGGTGGCGGCG
Internal bar code:CAAGCAAACAGTCATGGAGTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:2019
LEAP-Seq percent confirming:91.6667
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:AGGCAGAATTCGAAGCGTGA
Suggested primer 2:CCGGTACAGAATCGTGCACT