Insertion junction: CLIP2.002244_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.002244
Chromosome:chromosome 17
Location:3242590
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g721700 CPLD44 (1 of 3) PF13599 - Pentapeptide repeats (9 copies) (Pentapeptide_4); conserved expressed thylakoid lumenal protein-like 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGTCAGAACCCAAACAGTCGGTTCTCATATCACCAAGTTCTTCATTGCA
Internal bar code:GCGAGAGAGGACCTCATCCCAC

Confirmation - LEAP-Seq

LEAP-Seq distance:2106
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:21

Suggested primers for confirmation by PCR

Suggested primer 1:TGCCTGTGTACCGCAACTAG
Suggested primer 2:ACGCATCACAACAAACCTGC