Insertion junction: CLIP2.002283_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.002283
Chromosome:chromosome 16
Location:3635851
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g674890 CGLD5B AP2-domain transcription factor; (1 of 4) IPR000104//IPR001471//IPR016177 - Antifreeze protein, type I // AP2/ERF domain // DNA-binding domain 5'UTR_intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGTTGGAGCGCACCAGCTGCGGAGCTTCTGCAGGCTGGCCAAGAGCGCG
Internal bar code:ACTGCCACAGATCTGGCGCTGA

Confirmation - LEAP-Seq

LEAP-Seq distance:5094
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:GAAAAGGCAGACCCGCAAAG
Suggested primer 2:CGTTCAGAGGGTTGAGCCTT