Insertion junction: CLIP2.002349_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.002349
Chromosome:chromosome 2
Location:4713497
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g108200 CGL80 Conserved in the Green Lineage; (1 of 781) IPR000104 - Antifreeze protein, type I 5'UTR_intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CACGCGGTCGTGGGGTACCACGAACACAACGGTCGCAGACATTTCCCCGC
Internal bar code:AAACTGTCTGATGCGCTGGGTA

Confirmation - LEAP-Seq

LEAP-Seq distance:6027
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:24
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:GGTATCTCAGCTCACCGTCG
Suggested primer 2:TGTTGATTTTGCTGGCCGTG