Insertion junction: CLIP2.002368_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.002368
Chromosome:chromosome 6
Location:2321586
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g267600 LCYE,LEC1,LCYE1 (1 of 1) 5.5.1.18 - Lycopene epsilon-cyclase; lycopene epsilon cyclase, chloroplast precursor 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACGCGCATCAGCCCCTTTAGCTCGCTTGTAGGCGCACTTACGCAACAAA
Internal bar code:TGTGTGCGCTGACTAATGTGAT

Confirmation - LEAP-Seq

LEAP-Seq distance:1721
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:49
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:49

Suggested primers for confirmation by PCR

Suggested primer 1:TGCGCTAATCTGGTGAAGCA
Suggested primer 2:GCTCCAAAGAGGTCAGCCAT