Insertion junction: CLIP2.002376_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.002376
Chromosome:chromosome 16
Location:1930284
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g656050 (1 of 26) IPR000209 - Peptidase S8/S53 domain 3'UTR
Cre16.g656100 (1 of 1) PF07444 - Ycf66 protein N-terminus (Ycf66_N) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGTAACAAGCCCCAACAGGCAATCCATCCACAGCAGAACGGTCCCCCAG
Internal bar code:GGGACGAAGGCCGTATGGGAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:2836
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:31
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:31

Suggested primers for confirmation by PCR

Suggested primer 1:TCAGCTCTACCAAGCCCTCT
Suggested primer 2:GTGTTGTTTGGAGGCTGCAG