Insertion junction: CLIP2.002428_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.002428
Chromosome:chromosome 16
Location:1455036
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g652550 PRPL24 (1 of 1) PTHR12903:SF1 - 50S RIBOSOMAL PROTEIN L24, CHLOROPLASTIC; Chloroplast ribosomal protein L24 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCTATCCCGCTTTGTCACTGTATTCTTAGGAGGGGTCTAGAGGCCCAGAA
Internal bar code:AGTCTAGATCCACGTCCGTGAC

Confirmation - LEAP-Seq

LEAP-Seq distance:2365
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:5
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:TTTGCCCAGTCTCGTTCTCC
Suggested primer 2:AAACTAGAGCAAGTGGGGCC