Insertion junction: CLIP2.002437_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.002437
Chromosome:chromosome 1
Location:6909781
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g049600 CGLD22 (1 of 1) K02116 - ATP synthase protein I (atpI); Assembly factor for chloroplast ATPase outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGTGGCGTGGCAGAGGCCCAGCCATGTAGCCGGCCGTTGTTTAGAGGGGA
Internal bar code:AGAGCATCACATGAAAAATTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:833
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:ACTGTGCTGTGCAATGCTTG
Suggested primer 2:AGTGTCGAGGGATACGGTGA