Insertion junction: CLIP2.002499_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.002499
Chromosome:chromosome 1
Location:4700134
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g032550 CGL127 (1 of 1) K11267 - sister chromatid cohesion protein PDS5 (PDS5); Conserved in the Green Lineage intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCTCAAAATGTAACTACGGATCCTGCTCACGACCGCTGCCTTAGCTCGC
Internal bar code:TTGAGGGTCGGCGGCACTGCAG

Confirmation - LEAP-Seq

LEAP-Seq distance:2491
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:TATCTGCACTATGCCCTGCG
Suggested primer 2:TCTTGCTCATCCTCATCGGC