Insertion junction: CLIP2.002500_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.002500
Chromosome:chromosome 2
Location:508848
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g076600 Putative chloroplast localized Peptidyl-tRNA hydrolase; (1 of 1) K01056 - peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] (PTH1, pth, spoVC) 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGGGCAAGTTTGGGACTACTGTGCCTTTCCCACAAAAACCAATCGCTGT
Internal bar code:GATCGGCCCGCAAGCACTTGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:2642
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:CTTCGCCTGAGCTACTACCG
Suggested primer 2:CAGCTTGCGGCAGTCAATAC