Insertion junction: CLIP2.002505_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.002505
Chromosome:chromosome 6
Location:8567876
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g309650 (1 of 1) IPR003200//IPR006626//IPR011050 - Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like // Parallel beta-helix repeat // Pectin lyase fold/virulence factor intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCAACACATACGCAGAAATGGTGTGACCGGCAGCTTCTGTTGCATGTACG
Internal bar code:CAGATCCCCCACGTTGTGGACA

Confirmation - LEAP-Seq

LEAP-Seq distance:1894
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:GATCTACCCGACGAGGCAAG
Suggested primer 2:CATGCTGACATGCACGCTAC