Insertion junction: CLIP2.002512_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.002512
Chromosome:chromosome 13
Location:2606249
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g580850 PRPL22 Chloroplast ribosomal protein L22/L18; (1 of 1) PTHR13501//PTHR13501:SF3 - CHLOROPLAST 50S RIBOSOMAL PROTEIN L22-RELATED // SUBFAMILY NOT NAMED intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTGACCCCTCCCCTGCCCCTGCCCCAGGCCGCTGCCAACGCCAAGCACAA
Internal bar code:AGACCGGTGTTAAATGTGGGAC

Confirmation - LEAP-Seq

LEAP-Seq distance:1756
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:GTGGAAGGTCGGCTTCATGA
Suggested primer 2:CAACTTGCATGGGGGAAACG