Insertion junction: CLIP2.002521_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.002521
Chromosome:chromosome 3
Location:8795861
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g206929 RSE4,EGY1 (1 of 1) PTHR31412:SF0 - ZINC METALLOPROTEASE EGY1, CHLOROPLASTIC-RELATED; membrane associated metalloprotease involved in chloroplast development 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTCGTGATTTCACGTCTTTGTTGTGTTTCCACCCAAGGAACTTTCTGCAG
Internal bar code:CTATGTATGTTGACGGGTGGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:989
LEAP-Seq percent confirming:92.3077
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:13

Suggested primers for confirmation by PCR

Suggested primer 1:CTCCTTGTCCAGCATGTCGT
Suggested primer 2:TGTGCACCATCACTCCATCC