Insertion junction: CLIP2.002538_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.002538
Chromosome:chromosome 9
Location:782198
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g404000 CPLD59 (1 of 1) PF00805 - Pentapeptide repeats (8 copies) (Pentapeptide); thylakoid lumenal 17.4 kDa protein 3'UTR
Cre09.g404050 (1 of 40) PTHR23257//PTHR23257:SF513 - SERINE-THREONINE PROTEIN KINASE // SUBFAMILY NOT NAMED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGTGGGACAGCCGAGGGCCCAAGGAATGTGGTAGACGCAGGAAGGCGGCG
Internal bar code:AATTTAATTTGATGTTAAATAG

Confirmation - LEAP-Seq

LEAP-Seq distance:4104
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:107
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:107

Suggested primers for confirmation by PCR

Suggested primer 1:CCGGGCAATGCAAGCTAATC
Suggested primer 2:CAGCCTGTGACCTAAAGCCA